Molecular biology of RNA / David Elliott, Michael Ladomery.
| Author/creator | Elliott, David, 1965- |
| Other author | Ladomery, Michael. |
| Format | Book |
| Publication Info | Oxford ; New York : Oxford University Press, ©2011. |
| Description | ix, 441 pages : illustrations ; 27 cm |
| Electronic Location | Inhaltsverzeichnis |
| Subjects |
| Contents | Machine generated contents note: 1. Introduction to Molecular Biology of RNA -- 1.1. Aims of this book -- 2. RNA can form versatile structures -- 2.1. DNA and RNA are composed of slightly different building blocks -- 2.2. Nucleotides are joined together through a phosphodiester backbone to give nucleotidec hains -- 2.3. RNA secondary structure hydrogen bonding between bases holds nucleotide chains together in double helices -- 2.4. Nucleic acids have primary, secondary, and, in the case of RNA, tertiary structure -- 2.5. Five common secondary structure motifs are found within RNA molecules -- 2.6. Secondary structure motifs form through base pairing in RNA molecules -- 2.7. The formation of RNA duplexes is stimulated and particularly charged molecules and particularly metal ions -- 2.8. RNAs form tertiary structures -- 2.9. Complex folded RNAs which bind to target molecules can be selected -- 2.10. Riboswitches are shape-changing RNAs which can flip gene expression patterns on binding specific target molecules |
| Contents | 2.11. RNA helices can connect different molecules of RNA together -- 2.12. RNA is a versatile molecule -- 3. Catalytic RNAs -- 3.1. RNA is inherently chemically unstable because of its 2'-OH group -- 3.2. The protein enzyme RNAse A uses acid-base catalysis to carry out RNA strand cleavage -- 3.3. Three properties of RNA enable the catalytic function of ribozymes -- 3.4. Ribozymes are widespread in nature and fall into large and small groups -- 3.5. Small ribonucleolytic ribozymes catalyse their own cleavage -- 3.6. The hammerhead ribozyme -- 3.7. The HDV ribozyme -- 3.8. RNA-cutting ribozymes are used to control gene expression in both bacteria and eukaryotes -- 3.9. The large ribozymes -- 3.10. Group I introns are spliced through a two-step mechanism which uses metal ions in their active sites -- 3.11. Group II introns are also spliced through a two-step mechanism -- 3.12. RNAse P is an essential ribozyme which processes the 5' end of tRNA -- 3.13. Catalysis in the ribosome is RNA based -- 3.14. Are ribozymes true catalysts? -- 3.15. The RNA World hypothesis: a time when RNA was used as a genetic material |
| Contents | 3.16. Experiments have been carried out to model the early steps that might have occurred during the evolution of life -- 4. The RNA-binding proteins -- 4.1. The RNA recognition motif (RRM) -- 4.2. The K-homology (KH) domain -- 4.3. The cold-shock domain -- 4.4. Double-stranded RNA-binding proteins -- 4.5. The zinc-finger domain -- 4.6. Other RNA-binding domains -- 4.7. Investigating protein-RNA interactions -- 5. Co-transcriptional pre-mRNA processing -- 5.1. Transcription and the RNA polymerases -- 5.2. Formation of the ends of an mRNA -- 5.3. The C-terminal domain (CTD) of RNA polymerase II -- 5.4. The link between splicing and transcription -- 5.5. The spatial organization of pre-mRNA processing -- 5.6. Histone mRNA 3' end formation -- 6. Pre-mRNA splicing by the spliceosome -- 6.1. RNA splicing was discovered in a virus -- 6.2. Spliceosomal introns play a critical role in efficient eukaryotic gene expression -- 6.3. Introns enhance a eukaryotic gene expression at several levels -- 6.4. Pre-mRNAs are punctuated by splice sites at intron-exon junctions -- 6.5. Splice sites are complementary to a group of small nuclear RNAs |
| Contents | 6.6. snRNAs are associated with proteins to give snRNPs -- 6.7. Splicing follows a two-step reaction pathway -- 6.8. Splicing happens in a series of spliceosomal protein complexes -- 6.9. The spliceosome cycle -- 6.10. Spliceosome assembly and disassembly are cyclical -- 6.11. A minor class of eukaryotic spliceosomal introns have different splice sites -- 6.12. Major and minor spliceosomes coexist in most eukaryotes -- 6.13. Trans-splicing is common in trypanosome parasites and in the nematode C, elegans, where it enables efficient translation -- 6.14. Pre-mRNA splicing is thought to have evolved from parasitic DNA elements -- 6.15. Introns evolved early in eukaryotes -- 6.16. Introns and exons can both appear and disappear in evolution -- 7. How pre-mRNAs are decoded by the splicing machinery -- 7.1. Introns and exon definition -- 7.2. A splicing code helps exon recognition and so controls splicing -- 7.3. Discovery of the splicing code -- 7.4. The splicing code comprises binding sites for nuclear RNA-binding proteins embedded in transcribed sequences -- 7.5. The cis-splicing code is read by nuclear RNA-binding proteins |
| Contents | 8.6. Changes in the splicing code can regulate alternative splicing patterns -- 8.7. Signal transduction pathways can regulate alternative splicing by changing the function and location of splicing factors -- 8.8. Protein phosphorylation -- 8.9. Stimulation of cells with growth factors switches the splicing of the cell surface molecule CD44 -- 8.10. The splicing repressor hnRNP A1 relocalizes to the cytoplasm in response to cellular stress -- 8.11. Splicing decisions can be regulated by dephosphorylation of splicing factors -- 8.12. Transcription elongation speeds can regulate alternative splicing choices -- 8.13. Rates of elongation of RNA polymerase II can be regulated to affect alternative splicing -- 8.14. Transcription can also modulate splicing pathways via the recruitment of cofactors -- 8.15. Alternative splicing in action: alternative splicing pathways can control complex developmental pathways in metazoans -- 9. Pre-mRNA splicing defects in development and disease -- 9.1. Splicing mutations are very frequent causes of human genetic disease -- 9.2. Mutations in splicing control sequences frequently cause exon skipping in humans |
| Contents | 9.3. Molecular diagnosis of splicing mutations -- 9.4. Mutation of an exonic splicing enhancer in a DNA damage control gene leads to breast cancer -- 9.5. Genetic mutations create a new splice site in a premature ageing disease -- 9.6. Mutations which affect splicing can deregulate the ratio of alternatively spliced mRNAs -- 9.7. Mutations affecting splicing signals can be particularly severe since they change the structure of mRNAs -- 9.8. Manipulating pre-mRNA splicing offers a route to treating muscular dystrophy -- 9.9. Diseases caused by mutations in the transacting machinery which recognizes and splices together exons in the nucleus -- 9.10. The genes which encode important spliceosomal proteins are mutated in patients with retinitis pigmentosa (RP) -- 9.11. A protein important for snRNP assembly is affected by mutations causing spinal muscular atrophy (SMA) -- 9.12. There is scientific controversy about why exon 7 of the SMN2 is inefficiently spliced -- 9.13. Molecular therapy for SMA is targeted at correcting the splicing of SMN2 exon 7 -- 9.14. Diseases caused by mis-expression of levels of splicing factor |
| Contents | 10.11. Hijacking of the mRNA export machinery: the constitutive transport element sequence directs the nuclear export of unspliced transcripts from the MPMV virus -- 10.12. Movement of mRMPS through the nuclear pore -- 11. Nucleocytoplasmic traffic of non-coding RNA -- 11.1. Compartment-specific transport complexes -- 11.2. Nuclear transport of rRNA, tRNA, snRNAs, and microRNAs is dependent on the RAN GTPase protein -- 11.3. Different forms of RAN are found in the nucleus and cytoplasm -- 11.4. Non-coding RNA nuclear export complexes contain adaptors and receptors |
| Contents | Note continued: 11.5. Nuclear export of ncRNA is dependent on nuclear export adaptor and receptor proteins -- 11.6. Karyopherins are an important group of nuclear export receptors which respond to positional information provided by RAN -- 11.7. CRM1 is the nuclear export receptor (karyopherin) for rRNAs and snRNAs -- 11.8. Different karyopherins act as export receptors for tRNA and microRNAs -- 11.9. After releasing their loads in the cytoplasm nuclear RNA export components are moved back into the nucleus -- 11.10. Nuclear export of snRNAs -- 11.11. Mature snRNPs are re-imported into the nucleus using the nuclear protein import machinery -- 11.12. Mature U6 snRMP is made exclusively in the nucleus -- 11.13. Retroviruses have hijacked the RNA export machinery to assist in the export of partially processed mRNAs -- 12. Messenger RNA localization |
| Contents | 12.1. The need for mRNA localization -- 12.2. The machinery of mRNA localization -- 12.3. Classical examples of mRNA localization in development -- 12.4. Localization of mRNA in differentiated somatic cells -- 12.5. Localization of mRNA in plants -- 13. Translation of messenger RNA -- 13.1. What is translation? -- 13.2. The structure of the ribosome -- 13.3. Deciphering the genetic code -- 13.4. Three key steps in translation -- 13.5. Regulation of mRNA translation -- 13.6. The masked messages -- 13.7. Manipulating translation -- 14. Stability and degradation of mRNA -- 14.1. Messenger RNAs have a half-life -- 14.2. Sites and mechanisms of mRNA degradation -- 14.3. The process of mRNA degradation -- 14.4. Extracellular stimuli influence te stability of mRNA -- 14.5. Nonsense-mediated mRNA decay -- 14.6. Degradation of mRNA in bacteria and plants -- 15. RNA editing -- 15.1. Why edit RNA? |
| Contents | 15.2. A-->I editing takes place by modification of adenosine through removal of an amino group -- 15.3. A-->I editing affects RNA hydrogen bonding between bases since inosine forms stable base pairs with cytosine -- 15.4. A-->I editing was discovered because it destabilized dsRNAs -- 15.5. Alu elements are the main targets of A-->I editing in humans -- 15.6. Selective A-->I RNA editing by ADAR enzymes modifies mRNAs that contain short regions of dsRNA -- 15.7. The four known biological functions of A-->I mRNA editing in the cell -- 15.8. ADAR proteins are essential for normal nervous system development, but also play roles elsewhere in the body -- 15.9. A-->I editing plays an important role in the function of trRNAs -- 15.10. C-->U RNA editing takes place through base deamination (removal of an amino group from cytidine) -- 15.11. C-->U RNA editing makes two different forms of the APOB mRNA in different tissues, and was the first RNA editing reaction to be discovered in animals |
| Contents | 17.1. Introduction to epigenetic regulatory ncRNAs -- 17.2. Transcriptionally active and inactive DNA is created by tagging chromatin with simple chemical groups -- 17.3. Long ncRNAs help epigenetically programme important developmental control genes -- 17.4. A difference in size of the sex chromosomes means there is a requirement for dosage compensation -- 17.5. Dosage compensation in female mammals uses non-coding RNAs to inactivate one female X chromosome -- 17.6. Dosage compensation in fruit flies uses a dosage compensation complex including a long ncRNA to up-regulate expression from a single male X chromosome -- 17.7. Similarities and differences between mechanisms of dosage compensation in fruit flies and mammals -- 17.8. Genetic imprinting controls gene expression depending on the parent of origin of the gene or chromosome -- 17.9. Parentally imprinted gene clusters often include long ncRNAs -- 17.10. The ncRNA AIR epigenetically represses IGF2R gene expression by directing epigenetic chromatin modification |
| Contents | 17.11. Transcription of H19 ncRNA acts as a decoy for transcription of the IGF2 gene -- 18. The short non-coding RNAs and gene silencing -- 18.1. Key concepts and common pathways -- 18.2. Discovery and mechanism of RNA interference -- 18.3. The uses of RNA interference -- 18.4. Discovery, biogenesis, and developmental role of microRNAs -- 18.5. Transcriptional silencing by non-coding RNAs in the centromere -- 18.6. RNA-induced transcriptional silencing of transposons. |
| Bibliography note | Includes bibliographical references and index. |
| LCCN | 2011282480 |
| ISBN | 9780199288373 (pbk.) |
| ISBN | 0199288372 (pbk.) |
Availability
| Library | Location | Call Number | Status | Item Actions |
|---|---|---|---|---|
| Joyner | General Stacks | QP623 .E45 2011 | ✔ Available | Place Hold |