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001 ocn919448382;

003 OCoLC;

005 20160202100011.0;

006 m o d ;

007 cr bn|||||||||;

008 150831s2015 ncua ob 000 0 eng d;

035 a| (Sirsi) o919448382;

035 a| (OCoLC)919448382;

049 a| EREE;

090 a| QK495.M27;

100 1 a| Ma, June| author.=| ^A1279547;

245 10 a| Genome-wide identification and expression analysis of TCP transcription factors in cotton /c| by Jun Ma.;

264 1 a| [Greenville, N.C.] :b| [East Carolina University],c| 2015.;

300 a| 70 pages :b| color illustrations;

336 a| textb| txt2| rdacontent;

337 a| computerb| c2| rdamedia;

338 a| online resourceb| cr2| rdacarrier;

347 a| text fileb| PDFc| 1.78Mb2| rda;

538 a| System requirements: Adobe Reader.;

538 a| Mode of access: World Wide Web.;

502 b| M.S.c| East Carolina Universityd| 2015.;

500 a| Presented to the faculty of the Department of Biology.;

500 a| Advisor: Baohong Zhang.;

500 a| Title from PDF t.p. (viewed October 8, 2015).;

520 3 a| TCP proteins are plant-specific transcription factors known to perform a variety of physiological functions during plant growth and development. In the current study, we performed for the first time the comprehensive analysis of TCP gene family in two sequenced cotton species, Gossypium raimondii and Gossypium arboreum, including phylogenetic analysis, chromosome location, gene duplication status, gene structure and conserved motif analysis, as well as expression profiles in different tissues and at different developmental stages. Our results showed that a total of 38 non-redundant cotton TCP encoding genes were identified in G. raimondii, unevenly distributing across 11 out of the 13 chromosomes, whereas G. arboreum contains 36 TCP genes, which distributed across all of the thirteen chromosomes. GrTCPs and GaTCPs within the same subclade of the phylogenetic tree shared similar exon/intron organization and motif composition. In addition, both segmental duplication and whole-genome duplication contributed significantly to the expansion of cotton TCPs. Moreover, most TCP genes exhibited tissue-specific expression profiles, which shed light on their functional divergence. Remarkably, many these TCP transcription factor genes are specifically expressed in cotton fiber during different developmental stages, including cotton fiber initiation and early development. This suggests that TCP genes may play important roles in cotton fiber development.;

504 a| Includes bibliographical references.;

650 0 a| Cottonx| Genetics.=| ^A395574;

650 0 a| Gossypium raimondii.=| ^A1279679;

650 0 a| Transcription factors.=| ^A680413;

650 0 a| Proteins.=| ^A2392;

650 0 a| Cell proliferationx| Molecular aspects.=| ^A1279812;

653 a| Genetics;

653 a| Molecular biology;

653 a| Bioinformatics;

653 a| Expression profiles;

653 a| Fiber;

653 a| TCP;

700 1 a| Zhang, Baohonge| degree supervisor.=| ^A1031945;

710 2 a| East Carolina University.b| Department of Biology.=| ^A637467;

856 40 z| Access via ScholarShipu| http://hdl.handle.net/10342/5021;

949 o| jgml;

994 a| C0b| ERE;

596 a| 1 4;

998 a| 3808161;

999 a| CLICK ON WEB ADDRESSw| ASISc| 1i| 3808161-1001l| JNETm| JOYNERr| Ys| Yt| JNE3ETDu| 8/31/2015x| ETDz| JERESOURCE;

999 a| CLICK ON WEB ADDRESSw| ASISc| 1i| 3808161-2001l| HSLELECm| HSLr| Ys| Yt| HEETDu| 8/31/2015x| ETDz| HERESOURCE;

Genome-wide identification and expression analysis of TCP transcription factors in cotton / by Jun Ma.

Author/creator	Ma, Jun author.
Other author	Zhang, Baohong degree supervisor.
Other author	East Carolina University. Department of Biology.
Format	Theses and dissertations
Publication	[Greenville, N.C.] : [East Carolina University], 2015.
Description	70 pages : color illustrations
Supplemental Content	Access via ScholarShip
Subjects	Cotton--Genetics. Gossypium raimondii. Transcription factors. Proteins. Cell proliferation--Molecular aspects.

Summary	TCP proteins are plant-specific transcription factors known to perform a variety of physiological functions during plant growth and development. In the current study, we performed for the first time the comprehensive analysis of TCP gene family in two sequenced cotton species, Gossypium raimondii and Gossypium arboreum, including phylogenetic analysis, chromosome location, gene duplication status, gene structure and conserved motif analysis, as well as expression profiles in different tissues and at different developmental stages. Our results showed that a total of 38 non-redundant cotton TCP encoding genes were identified in G. raimondii, unevenly distributing across 11 out of the 13 chromosomes, whereas G. arboreum contains 36 TCP genes, which distributed across all of the thirteen chromosomes. GrTCPs and GaTCPs within the same subclade of the phylogenetic tree shared similar exon/intron organization and motif composition. In addition, both segmental duplication and whole-genome duplication contributed significantly to the expansion of cotton TCPs. Moreover, most TCP genes exhibited tissue-specific expression profiles, which shed light on their functional divergence. Remarkably, many these TCP transcription factor genes are specifically expressed in cotton fiber during different developmental stages, including cotton fiber initiation and early development. This suggests that TCP genes may play important roles in cotton fiber development.
General note	Presented to the faculty of the Department of Biology.
General note	Advisor: Baohong Zhang.
General note	Title from PDF t.p. (viewed October 8, 2015).
Dissertation note	M.S. East Carolina University 2015.
Bibliography note	Includes bibliographical references.
Technical details	System requirements: Adobe Reader.
Technical details	Mode of access: World Wide Web.

Genome-wide identification and expression analysis of TCP transcription factors in cotton / by Jun Ma.

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